PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G084300.1
Common NamePHAVU_004G084300g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family C2H2
Protein Properties Length: 513aa    MW: 56674.9 Da    PI: 6.0291
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G084300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2218.5e-07267288223
                         EETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                          C++Cgk F+r  nL+ H+r H
  Phvul.004G084300.1 267 FCTICGKGFKRDANLRMHMRGH 288
                         6*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.25E-5264291No hitNo description
PROSITE profilePS5015712.03266293IPR007087Zinc finger, C2H2
SMARTSM003550.0026266288IPR015880Zinc finger, C2H2-like
PfamPF128740.001267288No hitNo description
Gene3DG3DSA:3.30.160.609.8E-6267316IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280268288IPR007087Zinc finger, C2H2
SMARTSM0035547314347IPR015880Zinc finger, C2H2-like
SMARTSM0035521352374IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010044Biological Processresponse to aluminum ion
GO:0010447Biological Processresponse to acidic pH
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MDTNGSLRAN TWARSSSLTS DPLSFPGFGL QNNQPKWDDP SNSDYGIRAE VPFKEFNQPS  60
QTQSPLPCNS NNEIEIPNQE NCHLNESSQT STLQDWDPNV MLNNLSFLEE KIHQLQDLVH  120
LIVHQKGVGQ PNELVTQEQQ LVTTDLTSII IQLISTAGSL LPSVRHNLAN AASLFGQIDQ  180
LRGTTVPSGT GGSSSCIQPQ NNGAKKVSDQ SMQTDLPNNC EMEPNYNMAE QELKDEEDVD  240
DGENLAPGSY EILQLEKEEI LAPHTHFCTI CGKGFKRDAN LRMHMRGHGD EYKTPAALAK  300
PHKDSGSPKL IKRYSCPYPG CKRNKDHKKF QPLKTILCVK NHYKRTHCDK SYTCSRCNTK  360
KFSVMADLKT HEKHCGKDKW LCSCGTTFSR KDKLFGHIAL FQGHTPAIPL DDNKGVAEPP  420
NHDSKENSKV GNTNFTFGSS PSNGNEVENG MDVKGNNSDD PISFFSSLNF DTSFGGFNEF  480
TRPLFDDSEG SFSFVMPGSF KSGGESSADN LL*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00196ampDAPTransfer from AT1G34370Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151889.10.0hypothetical protein PHAVU_004G084300g
SwissprotQ9C8N51e-177STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLV7C3C60.0V7C3C6_PHAVU; Uncharacterized protein
STRINGGLYMA16G27280.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-176C2H2 family protein